PmiREN: Plant microRNA Encyclopedia

Zos-MIR169b

Basic info.

miRNA locus ID
Zos-MIR169b

miRNA locus accession
PmiREN024297

Organism
Zostera marina

Genomic location
Zos-scaffold_31 509718 509850 -

Comments
A member of family MIR169

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

 GA     -        TG   C        AT        T   -     GATA    -T      AGA
   AGTGT AGGAAGTA  ATG AGCCAAGG  GACTTGCC ACT CTTTT    TATG  CAATTC   
   ||||| ||||||||  ||| ||||||||  |||||||| ||| |||||    ||||  ||||||   A
   TCGTA TCCTTCAT  TAC TCGGTTCC  TTGAACGG TGA GGAAG    ATAC  GTTAAG   
TAC     C        TA   A        GG        T   A     ----    TT      GCT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Zosma39g00540.1	2.0	NA	NA
Zosma477g00060.1	2.0	1	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Zos-MIR169b

>