PmiREN: Plant microRNA Encyclopedia

Zos-MIR169c

Basic info.

miRNA locus ID
Zos-MIR169c

miRNA locus accession
PmiREN024298

Organism
Zostera marina

Genomic location
Zos-scaffold_44 72061 72199 -

Comments
A member of family MIR169

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

 A     -      ATATA   C          GA            TTTG  AT   --T        TAT
  GAGTG CAGGAA     ATG AGCCAAGGAT  CTTGCCAACTTC    TA  TGT   TCCTTTAT   
  ||||| ||||||     ||| ||||||||||  ||||||||||||    ||  |||   ||||||||   T
  CTCAT GTCCTT     TAT TCGGTTCCTG  GAACGGTTGAAG    GT  ACG   AGGGAGTA   
TA     A      CGTCG   A          TG            --TA  CT   TTT        TGT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Zosma39g00540.1	2.0	NA	NA
Zosma477g00060.1	2.0	2	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Zos-MIR169c

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