PmiREN: Plant microRNA Encyclopedia

Zos-MIR393a

Basic info.

miRNA locus ID
Zos-MIR393a

miRNA locus accession
PmiREN024313

Organism
Zostera marina

Genomic location
Zos-scaffold_25 91943 92061 +

Comments
A member of family MIR393

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

CTT     --        A      C        C    TGT    T TCATTT    CTCT
   GAGCT  TCTGTTGG GAATTC AAAGGGAT GCAT   TCCA G      CTCT    
   |||||  |||||||| |||||| |||||||| ||||   |||| |      ||||     
   TTCGA  AGACGACC TTTAAG TTTCCCTA CGTA   AGGT C      GAGA    
TTC     AG        C      A        T    -TT    T --TTCT    TCTT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Zosma8g00250.1	1.0	NA	NA
Zosma23g00160.1	1.5	1	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Zos-MIR393a

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