PmiREN: Plant microRNA Encyclopedia

Zos-MIR393b

Basic info.

miRNA locus ID
Zos-MIR393b

miRNA locus accession
PmiREN024314

Organism
Zostera marina

Genomic location
Zos-scaffold_129 416390 416516 +

Comments
A member of family MIR393

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

T      G --C   T  A               C    T      T --TCTCTTTT   GAAAA
 ATGGAC G   TGC GG GGATTCCAAAGGGAT GCAT GATCCA C          TCA     
 |||||| |   ||| || ||||||||||||||| |||| |||||| |          |||      
 TACTTG T   ACG CC TTTAAGGTTTCCCTA CGTA CTAGGT G          AGT     
T      G CTA   T  C               T    -      T TTGTTGTGGT   GACTT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Zosma8g00250.1	1.0	NA	NA
Zosma23g00160.1	1.5	1	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Zos-MIR393b

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