PmiREN: Plant microRNA Encyclopedia

Zos-MIR858

Basic info.

miRNA locus ID
Zos-MIR858

miRNA locus accession
PmiREN024317

Organism
Zostera marina

Genomic location
Zos-scaffold_34 494541 494708 +

Comments
A member of family MIR858

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

ATCGATCT        A   -----     A         TAA   A  G    GCTTC    -----A   AGCCGGGTGAGTAGTTGCCA
        ATACATGT AGT     AGGTT GAACAGATA   GAA GA AAGA     CTGC      GCC                    
        |||||||| |||     ||||| |||||||||   ||| || ||||     ||||      |||                     
        TATGTACG TCA     TCCAG CTTGTCTGT   CTT CT TTCT     GACG      GAC                    
   CTAAT        C   ATAGT     -         -TG   -  A    AACTA    ATTCTA   AAATGAACTGTTCTTATCAT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Zosma55g00400.1	1.5	NA	NA
Zosma170g00120.1	2.0	2	NA
Zosma3g01690.1	2.0	NA	NA
Zosma68g00080.1	2.0	2	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Zos-MIR858

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