miRNA targets prediction tools for plants and animals

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miRNA targets prediction tools for plants and animals

Tools	Organism	Publication Span	Current Version	Aviailability	Reference
Cleaveland4	P	2009	v4.1	https://pubmed.ncbi.nlm.nih.gov/19017659/	https://github.com/MikeAxtell/CleaveLand4
SVmicro	A	2010	v1	http://compgenomics.utsa.edu/svmicro.html	https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-11-476
miRecords	A	2013	v1	https://www.hsls.pitt.edu/obrc/index.php?page=URL1237998207	https://pubmed.ncbi.nlm.nih.gov/18996891/
RNARobtot	P	2013	2013 relaese	http://omicslab.genetics.ac.cn/psRobot/	https://academic.oup.com/nar/article/40/W1/W22/1751652
TargetScanHuman	A	2015	v7.2	http://www.targetscan.org/vert_72/	https://elifesciences.org/articles/05005
psRNATarget	P	2017	2017 release	http://plantgrn.noble.org/psRNATarget/?function	https://pubmed.ncbi.nlm.nih.gov/29718424/
miRwalk	A	2018	v3	http://mirwalk.umm.uni-heidelberg.de/	https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0206239
miRDB	A	2020	v1	http://mirdb.org/	https://academic.oup.com/nar/article/48/D1/D127/5557729
miRTarBase	A, P	2020	v8.0	http://mirtarbase.cuhk.edu.cn/php/index.php	https://academic.oup.com/nar/article/48/D1/D148/5606625
miRgo	A	2020	v1	http://predictor.nchu.edu.tw/miRgo/	https://www.nature.com/articles/s41598-020-58336-5

Note: Organism: Animal (A), plant (P);Type: I (comprehensive database); II (miRNA-target interaction database); III(miRNA annotations in specific species); IV (others).

dongfy88

Good resource!