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miRNA targets prediction tools for plants and animals

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Post time 2021-6-9 12:30:28 | Show all posts |Read mode
miRNA targets prediction tools for plants and animals

Tools
Organism
Publication Span
Current Version
Aviailability
Reference
  
Cleaveland4
  
P
2009
v4.1
https://pubmed.ncbi.nlm.nih.gov/19017659/
https://github.com/MikeAxtell/CleaveLand4
  
SVmicro
  
A
2010
v1
http://compgenomics.utsa.edu/svmicro.html
https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-11-476
  
miRecords
  
A
2013
v1
https://www.hsls.pitt.edu/obrc/index.php?page=URL1237998207
https://pubmed.ncbi.nlm.nih.gov/18996891/
  
RNARobtot
  
P
2013
2013 relaese
http://omicslab.genetics.ac.cn/psRobot/
https://academic.oup.com/nar/article/40/W1/W22/1751652
  
TargetScanHuman
  
A
2015
v7.2
http://www.targetscan.org/vert_72/
https://elifesciences.org/articles/05005
  
psRNATarget
  
P
2017
2017 release
http://plantgrn.noble.org/psRNATarget/?function
https://pubmed.ncbi.nlm.nih.gov/29718424/
  
miRwalk
  
A
2018
v3
http://mirwalk.umm.uni-heidelberg.de/
https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0206239
  
miRDB
  
A
2020
v1
http://mirdb.org/
https://academic.oup.com/nar/article/48/D1/D127/5557729
  
miRTarBase
  
A, P
2020
v8.0
http://mirtarbase.cuhk.edu.cn/php/index.php
https://academic.oup.com/nar/article/48/D1/D148/5606625
  
miRgo
  
A
2020
v1
http://predictor.nchu.edu.tw/miRgo/
https://www.nature.com/articles/s41598-020-58336-5


Note: Organism: Animal (A), plant (P);Type: I (comprehensive database); II (miRNA-target interaction database); III(miRNA annotations in specific species); IV (others).


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Post time 2021-6-11 14:06:54 | Show all posts
Good resource!
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