miRNA databases for plant and animal
| | | | | | | | | Rfam | Rfam contains information about all types of noncoding RNA (ncRNA) families, each represented by multiple sequence alignments, consensus secondary structures, etc. Current version includes over 3000 miRNA families in different organisms. | | | | | | https://academic.oup.com/nar/article/36/suppl_1/D982/2508434 | | miRBase | miRBase is the first miRNA registry and the most influential miRNA database, which collects and accepts miRNA entries from researchers and publications in all different organisms. Abundant information on miRNAs including community contribution and curation greatly extends its capacity and influence. | | | | | | https://academic.oup.com/nar/article/47/D1/D155/5179337 | | ASRP | Arabidopsis Small RNA Project (ASRP) database is a collection of different type small RNAs, NGS datasets of sRNAs, PARE and mutants of key genes in small RNA biogenesis pathway in model plant, Arabidopsis. | | | | | https://asrp.danforthcenter.org/ | https://academic.oup.com/nar/article/40/D1/D222/2903277 | | TarBase | TarBase is devoted to the indexing of experimentally supported miRNA targets. Current version holds over 1 million entries corresponding to around 670 000 unique miRNA-target pair interactions, which are supported by more than 33 experimental methodologies. | | | | | http://microrna.gr/tarbase/ | https://pubmed.ncbi.nlm.nih.gov/31647101/ | | PMRD/PNRD | First version of PMRD (plant microRNA database) has 8843 miRNAs in 121 plant species while its updated version, PNRD (Plant Noncoding RNA Database) collected 25 739 noncoding RNA records from 150 plant organisms. Expression profiles and putative targets are also provided. | | | | | http://bioinformatics.cau.edu.cn/PMRD/ | http://dx.doi.org/10.1093/nar/gkq721 |
Note: Organism: Animal (A), plant (P);Type: I (comprehensive database); II (miRNA-target interaction database); III(miRNA annotations in specific species); IV (others).
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Post time 2021-6-9 12:20:26
Post time 2023-4-3 17:34:46