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miRNA databases for plant and animal

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Post time 2021-6-9 12:20:26 | Show all posts |Read mode
miRNA databases for plant and animal

Database
Brief Introduction
Organism
Types
Publication Span
Lastest Update
Aviailability
Reference
  
Rfam
  
Rfam contains  information about all types of noncoding RNA (ncRNA) families, each  represented by multiple sequence alignments, consensus secondary structures,  etc. Current version includes over 3000 miRNA families in different  organisms.
A, P
I
2003–2018
V14.3 (2020)
http://rfam.xfam.org/
https://academic.oup.com/nar/article/36/suppl_1/D982/2508434
  
miRBase
  
miRBase  is the first miRNA registry and the most influential miRNA database, which  collects and accepts miRNA entries from researchers and publications in all  different organisms. Abundant information on miRNAs including community  contribution and curation greatly extends its capacity and influence.
A,  P
I
2003–2019
V22.1  (2018)
http://www.mirbase.org/
https://academic.oup.com/nar/article/47/D1/D155/5179337
  
ASRP
  
Arabidopsis Small  RNA Project (ASRP) database is a collection of different type small RNAs, NGS  datasets of sRNAs, PARE and mutants of key genes in small RNA biogenesis  pathway in model plant, Arabidopsis.
P
III
2005–2008
2016
https://asrp.danforthcenter.org/
https://academic.oup.com/nar/article/40/D1/D222/2903277
  
TarBase
  
TarBase  is devoted to the indexing of experimentally supported miRNA targets. Current  version holds over 1 million entries corresponding to around 670 000 unique  miRNA-target pair interactions, which are supported by more than 33  experimental methodologies.
A,  P
II
2006–2018
V8  (2018)
http://microrna.gr/tarbase/
https://pubmed.ncbi.nlm.nih.gov/31647101/
  
PMRD/PNRD
  
First version of PMRD  (plant microRNA database) has 8843 miRNAs in 121 plant species while its  updated version, PNRD (Plant Noncoding RNA Database) collected 25 739  noncoding RNA records from 150 plant organisms. Expression profiles and  putative targets are also provided.
P
I
2010–2014
2016
http://bioinformatics.cau.edu.cn/PMRD/
http://dx.doi.org/10.1093/nar/gkq721


Note: Organism: Animal (A), plant (P);Type: I (comprehensive database); II (miRNA-target interaction database); III(miRNA annotations in specific species); IV (others).

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