Bol-MIR165a

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  GAAGCTATTTCA    A    A   TT      A         TTA        --------       --    ATAT
              GTTG GGGG ATG  GTCTGG TCGAGGATA   TATATACA        CAAATAC  GTAT    
              |||| |||| |||  |||||| |||||||||   ||||||||        |||||||  ||||     
              CAAT CCCC TAC  CGGACC GGCTCTTAT   ATATATGT        GTTTGTG  CATA    
TCTCCGTTATTGTA    C    C   TT      A         TAG        ATATACTA       AA    ATTG

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-100 Aly-MIR165a Aly-scaffold_1: 449084-449219 + Brassica oleracea Bol-MIR165a Bol-C05: 281079-281228 +
SY-485 Ath-MIR165a Ath-Chr1: 78912-79050 - Brassica oleracea Bol-MIR165a Bol-C05: 281079-281228 +
SY-766 Bol-MIR165a Bol-C05: 281079-281228 + Brassica oleracea Bol-MIR165b Bol-C08: 41197079-41197233 -
SY-767 Bol-MIR165a Bol-C05: 281079-281228 + Brassica rapa Bra-MIR165b Bra-A09: 44653661-44653815 -
SY-768 Bol-MIR165a Bol-C05: 281079-281228 + Brassica rapa Bra-MIR165d Bra-A10: 341341-341496 +
SY-769 Bol-MIR165a Bol-C05: 281079-281228 + Eutrema salsugineum Esa-MIR165 Esa-scaffold_5: 15258725-15258867 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Bol017514 0.5 NA NA
Bol017856 0.5 NA NA
Bol022567 0.5 NA NA
Bol035990 0.5 NA NA
Bol037848 0.5 NA NA
Bol019484 1.5 NA NA
Bol027381 1.5 NA NA
Bol035052 1.5 NA NA
Bol041327 1.5 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference