Bol-MIR165c

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
 A    T  TT -C    C    A   TC      A        AT   C           GCATA
  AGGC AT  C  GTTG GGGG ATG  GTTTGG TCGAGGAT  CAT ATATGCATAAT     
  |||| ||  |  |||| |||| |||  |||||| ||||||||  ||| |||||||||||     C
  TCCG TA  G  CAAC CCCC TAC  CGGACC GGCTCTTA  GTA TATACGTGTTA     
CT    T  TT CA    T    C   TT      A        AT   -           ATATA

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-773 Bol-MIR165c Bol-C09: 468121-468250 + Brassica rapa Bra-MIR165c Bra-A09: 449472-449636 -
SY-774 Bol-MIR165c Bol-C09: 468121-468250 + Eutrema salsugineum Esa-MIR166g Esa-scaffold_3: 546347-546498 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Bol017514 0.5 NA NA
Bol017856 0.5 NA NA
Bol022567 0.5 NA NA
Bol035990 0.5 NA NA
Bol037848 0.5 NA NA
Bol019484 1.5 NA NA
Bol027381 1.5 NA NA
Bol035052 1.5 NA NA
Bol041327 1.5 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

Link

Reference