Bol-MIR166b

Basic info.

• miRNA locus ID
• Bol-MIR166b

• miRNA locus accession
• PmiREN002333

• Organism
• Brassica oleracea

• Genomic location
• Bol-C07  78288  78427  -

• Comments
• A member of family MIR166

• Confidence level
• 

Secondary strurture and sequence

  TCTGAGCCAA     C   T      T      C    G C   --------   A   G        G  GA
            AAGTT AGG GGATGA GCTTGG TCGA A CAT        TCA TAT ATCATTGT AT  
            ||||| ||| |||||| |||||| |||| | |||        ||| ||| |||||||| ||   
            TTCAA TCC CTTACT CGGACC GGCT T GTA        AGT ATA TAGTAGTA TA  
GCGTTTTGCACA     C   C      T      A    G A   ATAGTAAT   A   G        G  GT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• >High-throughput sequencing identification of novel and conserved miRNAs in the Brassica oleracea leaves. BMC Genomics, 2013