Bol-MIR166d

Basic info.

• miRNA locus ID
• Bol-MIR166d

• miRNA locus accession
• PmiREN002335

• Organism
• Brassica oleracea

• Genomic location
• Bol-C04  40715614  40715778  +

• Comments
• A member of family MIR166

• Confidence level
• 

Secondary strurture and sequence

  AGGGGCTTTCTCTT   A        TT      C    A        CT    AT          -C   GATCTAATCGA
                TTG GGGGAATG  GTTTGG TCGA GACTCTAG  ATTC  GTTAGATCTT  TTC           
                ||| ||||||||  |||||| |||| ||||||||  ||||  ||||||||||  |||           A
                AAC CCCCTTAC  CGGACC GGCT CTGGGATT  TAGG  TAGTCTAGAG  TGT           
TTCGTCCCTCGTTATT   C        TT      A    G        -T    AT          TT   ACCTCCACACT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• >High-throughput sequencing identification of novel and conserved miRNAs in the Brassica oleracea leaves. BMC Genomics, 2013