Bol-MIR167a

Basic info.

• miRNA locus ID
• Bol-MIR167a

• miRNA locus accession
• PmiREN002337

• Organism
• Brassica oleracea

• Genomic location
• Bol-C01  27616766  27616904  -

• Comments
• A member of family MIR167

• Confidence level
• 

Secondary strurture and sequence

 AAC     -    G  TCT A         C              A  T   TT     -G  G   TTA
    GGTGC ACAG CA   G TGAAGCTGC AGCATGATCTAATT AC TTC  TCTCT  TT ATT   
    ||||| |||| ||   | ||||||||| |||||||||||||| || |||  |||||  || |||   T
    CCACG TGTC GT   C ACTTTGACG TTGTACTAGATTAG TG GAG  AGAGA  AG TAG   
ATTC     C    A  TAC C         C              C  T   -T     AA  G   CAG

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• >Quantitative expression of microRNAs in Brassica oleracea infected with Xanthomonas campestris pv. campestris. Mol Biol Rep, 2019
• >The auxin response factor gene family in allopolyploid Brassica napus. PLoS One, 2019
• >High-throughput sequencing identification of novel and conserved miRNAs in the Brassica oleracea leaves. BMC Genomics, 2013