Bol-MIR167c

Basic info.

• miRNA locus ID
• Bol-MIR167c

• miRNA locus accession
• PmiREN002339

• Organism
• Brassica oleracea

• Genomic location
• Bol-C04  15204526  15204657  +

• Comments
• A member of family MIR167

• Confidence level
• 

Secondary strurture and sequence

CAAA   ---  AA     TA          C   -         T   T    AAG    G      GA
    TCC   AC  GGGAA  AGTGAAGCTG CAG CATGATCTA CTT GGTT   AAAT AATGTG  
    |||   ||  |||||  |||||||||| ||| ||||||||| ||| ||||   |||| ||||||   
    AGG   TG  TCCTT  TCACTTCGAC GTC GTACTGGAT GGA CCAA   TTTG TTGTAC  
TATC   ATC  -G     CC          A   T         C   C    --A    -      AA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• >Quantitative expression of microRNAs in Brassica oleracea infected with Xanthomonas campestris pv. campestris. Mol Biol Rep, 2019
• >The auxin response factor gene family in allopolyploid Brassica napus. PLoS One, 2019
• >High-throughput sequencing identification of novel and conserved miRNAs in the Brassica oleracea leaves. BMC Genomics, 2013