Bol-MIR168a

Basic info.

• miRNA locus ID
• Bol-MIR168a

• miRNA locus accession
• PmiREN002340

• Organism
• Brassica oleracea

• Genomic location
• Bol-C07  24398324  24398464  +

• Comments
• A member of family MIR168

• Confidence level
• 

Secondary strurture and sequence

  ATG     G   C   T               -  T     A      --G   G   CT    --    GCT
     TTACG CGG CTC GATTCGCTTGGTGCA GG CGGGA CTGATT   GCT ACA  GCCA  CGTG   
     ||||| ||| ||| ||||||||||||||| || ||||| ||||||   ||| |||  ||||  ||||    
     AGTGC GCC GAG CTAAGTGAACTATGT CC GCCCT GGCTAG   CGA TGT  CGGT  GTAC   
AAGAA     A   T   C               G  -     A      GGA   G   -T    TG    TTT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• >Identification and characterization of microRNAs in oilseed rape (Brassica napus) responsive to infection with the pathogenic fungus Verticillium longisporum using Brassica AA (Brassica rapa) and CC (Brassica oleracea) as reference genomes. New Phytol, 2014