Bol-MIR169a

Basic info.

• miRNA locus ID
• Bol-MIR169a

• miRNA locus accession
• PmiREN002343

• Organism
• Brassica oleracea

• Genomic location
• Bol-C03  50192527  50192643  +

• Comments
• A member of family MIR169

• Confidence level
• 

Secondary strurture and sequence

       AT      T    TT         AT          TTTTTT   AC     TAT
  GAAGA  AGAGAA GAAG  GAGCCAAGG  GACTTGCCAA      CCA  GAATC   
  |||||  |||||| ||||  |||||||||  ||||||||||      |||  |||||    
  CTTTT  TCTCTT CTTT  CTCGGTTTC  TTGAACGGTT      GGT  TTTAG   
AG     CT      C    GT         AG          ---TGT   --     TCA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• >Quantitative expression of microRNAs in Brassica oleracea infected with Xanthomonas campestris pv. campestris. Mol Biol Rep, 2019
• >High-throughput sequencing identification of novel and conserved miRNAs in the Brassica oleracea leaves. BMC Genomics, 2013