Bol-MIR169g

Basic info.

• miRNA locus ID
• Bol-MIR169g

• miRNA locus accession
• PmiREN002349

• Organism
• Brassica oleracea

• Genomic location
• Bol-C06  21190197  21190315  -

• Comments
• A member of family MIR169

• Confidence level
• 

Secondary strurture and sequence

  G      T      T  T  T         A          ATTTTA    CTAACCTA
   GAAAAA AGAGAA GA AT GAGCCAAAG TGACTTGCCG      CCAA        
   |||||| |||||| || || ||||||||| ||||||||||      ||||        A
   CTTTTT TCTCTT CT TG CTCGGTTTC GCTGAACGGC      GGTT        
TAG      T      C  T  T         A          --CATC    ATAGTTAA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 3268
• Chromosome: Bol-C06
• Cluster start: 21189916
• Cluster end: 21190315

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• >Quantitative expression of microRNAs in Brassica oleracea infected with Xanthomonas campestris pv. campestris. Mol Biol Rep, 2019
• >High-throughput sequencing identification of novel and conserved miRNAs in the Brassica oleracea leaves. BMC Genomics, 2013