Bol-MIR319a

Basic info.

• miRNA locus ID
• Bol-MIR319a

• miRNA locus accession
• PmiREN002352

• Organism
• Brassica oleracea

• Genomic location
• Bol-C01  10405597  10405806  +

• Comments
• A member of family MIR319

• Confidence level
• 

Secondary strurture and sequence

  GTAGGAATATATATC     A          G      T       CT  G T   A       A    -   AC    C   C  AA  C      ACCAAATT
                 GAGGG GAGCTTCCTT AGTCCA TCAGAGG  GT A ATG TCCAATT GTTT CCG  TCAT CAT CA  TA CGAGTT        
                 ||||| |||||||||| |||||| |||||||  || | ||| ||||||| |||| |||  |||| ||| ||  || ||||||         
                 CTCTC CTCGAGGGAA TCAGGT GGTTTCT  TA T TAC AGGTTAA CAGA GGC  AGTA GTA GT  AT GCTCAG        
TTTAATATCATAATTCT     C          G      T       CT  G -   A       A    T   GT    A   A  AA  T      ATCGAATT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• >Microsynteny analysis to understand evolution and impact of polyploidization on MIR319 family within Brassicaceae. Dev Genes Evol, 2018
• >MicroRNA319a-targeted Brassica rapa ssp. pekinensis TCP genes modulate head shape in chinese cabbage by differential cell division arrest in leaf regions. Plant Physiol, 2014
• >Comparative analysis of the MIR319a microRNA locus in Arabidopsis and related Brassicaceae. Mol Biol Evol, 2008