Bol-MIR393

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  AC   A         A        A          T      ---   T    -TG       CCCCAATAGTTATTCTTT
    AGC ACTAGAGAA GGATCCAA GGGATCGCAT GATCCA   AAT AAGC   AATTATT                  
    ||| ||||||||| |||||||| |||||||||| ||||||   ||| ||||   |||||||                  T
    TCG TGGTTTCTT CTTAGGTT CTCTAGCGTA CTAGGT   TTA TTCG   AGAAGAA                  
ACCT   A         A        A          -      CTT   C    TTC       AAGTAGAAAGCTAACTCT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-647 Ath-MIR393b Ath-Chr3: 20691637-20691818 + Brassica oleracea Bol-MIR393 Bol-C04: 22919381-22919540 -
SY-872 Bol-MIR393 Bol-C04: 22919381-22919540 - Brassica rapa Bra-MIR393c Bra-A09: 35133997-35134164 +
SY-873 Bol-MIR393 Bol-C04: 22919381-22919540 - Brassica rapa Bra-MIR393e Bra-A07: 16290941-16291110 +
SY-874 Bol-MIR393 Bol-C04: 22919381-22919540 - Capsella rubella Cru-MIR393b Cru-scaffold_5: 10912783-10912975 +
SY-875 Bol-MIR393 Bol-C04: 22919381-22919540 - Eutrema salsugineum Esa-MIR393b Esa-scaffold_16: 74485-74658 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Bol029131 1.0 NA NA
Bol031116 1.0 NA NA
Bol031389 1.0 1 NA
Bol044461 1.0 1 NA
Bol006113 2.0 NA NA
Bol028711 2.0 1 NA
Bol037308 2.0 1 NA

Mature miRNA conservation

?

Mature miRNA conservation

Link

Reference