Bra-MIR156i

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
     T   G        AAA     --     G  -     C      A      GA          AA  TA
      GTT ATGGGGGA   GAAGT  TGACA AA GAGAG GAGCAC CAAAGG  GAATTGTATA  AT  
      ||| ||||||||   |||||  ||||| || ||||| |||||| ||||||  ||||||||||  ||   
      TAA TACTTCCT   CTTCA  ACTGT TT CTCTT CTCGTG GTTTTC  TTTGACATAT  TA  
TGGTTC   G        ---     AT     G  G     A      C      -A          -G  TA

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-18 Aly-MIR156d Aly-scaffold_6: 4353129-4353256 - Brassica rapa Bra-MIR156i Bra-A10: 16972594-16972728 +
SY-408 Ath-MIR156d Ath-Chr5: 3456625-3456752 - Brassica rapa Bra-MIR156i Bra-A10: 16972594-16972728 +
SY-890 Bra-MIR156i Bra-A10: 16972594-16972728 + Eutrema salsugineum Esa-MIR156g Esa-scaffold_2: 3514669-3514800 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Brara.C01719.1 0.5 0 NA
Brara.D00262.1 1.0 1 NA
Brara.D02060.1 1.0 1 NA
Brara.D02564.1 1.0 1 NA
Brara.E00270.1 1.0 1 NA
Brara.E01026.1 1.0 1 NA
Brara.F03810.1 1.0 NA NA
Brara.G00852.1 1.0 1 NA
Brara.G00853.1 1.0 1 NA
Brara.G01764.1 1.0 1 NA
Brara.G02852.1 1.0 0 NA
Brara.H02059.1 1.0 NA NA
Brara.I01777.1 1.0 NA NA
Brara.I03020.1 1.0 1 NA
Brara.B01839.1 1.5 1 NA
Brara.I03021.1 1.5 1 NA
Brara.A03153.1 2.0 2 NA
Brara.C01519.1 2.0 2 NA
Brara.E02615.1 2.0 2 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference