Bra-MIR160b

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  ATATATATGATACGAA  C    C     - C           A   AAATA     C   T
                  GT ATGC TGGCT C CTGTATGCCAC AGT     CCGAT TCA 
                  || |||| ||||| | ||||||||||| |||     ||||| ||| T
                  CA TACG ACTGA G GACATGCGGTG TCA     GGCTA AGT 
TATAGTTCTTATAGTCAC  A    A     T A           A   ---CA     A   A

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-72 Aly-MIR160b Aly-scaffold_7: 11280818-11280940 - Brassica rapa Bra-MIR160b Bra-A01: 4672672-4672794 +
SY-455 Ath-MIR160b Ath-Chr4: 9888966-9889088 + Brassica rapa Bra-MIR160b Bra-A01: 4672672-4672794 +
SY-743 Bol-MIR160b Bol-C01: 6058533-6058655 + Brassica rapa Bra-MIR160b Bra-A01: 4672672-4672794 +
SY-932 Bra-MIR160b Bra-A01: 4672672-4672794 + Brassica rapa Bra-MIR160d Bra-A06: 27597530-27597653 +
SY-933 Bra-MIR160b Bra-A01: 4672672-4672794 + Capsella rubella Cru-MIR160b Cru-scaffold_7: 8935803-8935927 -
SY-934 Bra-MIR160b Bra-A01: 4672672-4672794 + Eutrema salsugineum Esa-MIR160b Esa-scaffold_1: 9864399-9864521 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Brara.G02126.1 0.5 NA NA
Brara.G03536.1 0.5 NA NA
Brara.G01369.1 1.0 NA NA
Brara.A00733.1 1.5 NA NA
Brara.K00855.1 1.5 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference