Bra-MIR162a

Basic info.

• miRNA locus ID
• Bra-MIR162a

• miRNA locus accession
• PmiREN002417

• Organism
• Brassica rapa

• Genomic location
• Bra-A03  22089695  22089829  +

• Comments
• A member of family MIR162

• Confidence level
• 

Secondary strurture and sequence

   TGATGA   TT    T       G    C    C       A    C   GAAAA   - T    GA
         AAG  GAAG CGCTGGA GCAG GGTT ATCGATC ATTC TGT     ATG A GTTG  
         |||  |||| ||||||| |||| |||| ||||||| |||| |||     ||| | ||||   
         TTC  CTTC GTGACCT CGTC CCAA TAGCTAG TAAG ACG     TAC T TAAC  
GTTTAGTCC   CT    -       A    T    A       C    T   AAGGG   A T    AA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• Link To miRbase
• Link To PNDB

Reference

• No reference