Bra-MIR164f

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  AG      TGC  AG  A     A    CA         CATT         T T TTAG  -    ---------         T TCCC
    AAGGTG   TG  CA GATGG GAAG  GGGCACGTG    ACTAACTCA C C    TC CACG         TATATACAC C    
    ||||||   ||  || ||||| ||||  |||||||||    ||||||||| | |    || ||||         ||||||||| |    C
    TTCCAC   AC  GT CTACC CTTC  CCCGTGTAC    TGATTGAGT G G    AG GTGT         GTATATGTG G    
GTAG      TTC  CA  A     C    TA         TTCT         T T -TGA  T    GTAGAGATA         C TAAA

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-93 Aly-MIR164b Aly-scaffold_6: 111763-111961 - Brassica rapa Bra-MIR164f Bra-A02: 100977-101150 -
SY-475 Ath-MIR164b Ath-Chr5: 287566-287756 + Brassica rapa Bra-MIR164f Bra-A02: 100977-101150 -
SY-759 Bol-MIR164b Bol-C02: 55672-55845 - Brassica rapa Bra-MIR164f Bra-A02: 100977-101150 -
SY-956 Bra-MIR164f Bra-A02: 100977-101150 - Capsella rubella Cru-MIR164c Cru-scaffold_6: 26048-26250 -
SY-957 Bra-MIR164f Bra-A02: 100977-101150 - Eutrema salsugineum Esa-MIR164c Esa-scaffold_2: 113802-113982 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Brara.B00259.1 0.5 1 NA
Brara.B03769.1 0.5 1 NA
Brara.C04256.1 0.5 1 NA
Brara.J02533.1 0.5 1 NA
Brara.A03159.1 1.0 1 NA
Brara.B01408.1 1.0 1 NA
Brara.C03443.1 1.0 1 NA
Brara.C03560.1 1.0 1 NA
Brara.H00015.1 1.0 NA NA
Brara.J00883.1 1.0 1 NA
Brara.E02808.1 1.5 1 NA
Brara.D00978.1 2.0 2 NA
Brara.G01456.1 2.0 2 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference