PmiREN: Plant microRNA Encyclopedia

Bra-MIR166e

Basic info.

miRNA locus ID
Bra-MIR166e

miRNA locus accession
PmiREN002434

Organism
Brassica rapa

Genomic location
Bra-A07 15385796 15385945 -

Comments
A member of family MIR166

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

         TTTTTTCTT            TT      CA   G C C     A  GATCTAC     G        A
    GAAGT         TTGAGGGGAATG  GTCTGG  CGA G C TTAAC CA       GATCG TTATATAT 
    |||||         ||||||||||||  ||||||  ||| | | ||||| ||       ||||| |||||||| T
    CTTCG         AACTCCCCTTAC  CGGACC  GCT C G AGTTG GT       CTAGC AGTATATA 
CTAG     --CTACATT            TT      AG   G A T     -  GATTTAA     A        A

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID	miRNA locus 1	miRNA locus 1 position	Organism	miRNA locus 2	miRNA locus 2 position
SY-136	Aly-MIR166e	Aly-scaffold_7: 21195594-21195766 +	Brassica rapa	Bra-MIR166e	Bra-A07: 15385796-15385945 -
SY-512	Ath-MIR166e	Ath-Chr5: 16775504-16775676 -	Brassica rapa	Bra-MIR166e	Bra-A07: 15385796-15385945 -
SY-962	Bra-MIR166a	Bra-A04: 11059701-11059852 +	Brassica rapa	Bra-MIR166e	Bra-A07: 15385796-15385945 -
SY-975	Bra-MIR166e	Bra-A07: 15385796-15385945 -	Capsella rubella	Cru-MIR166e	Cru-scaffold_7: 15274115-15274322 +
SY-976	Bra-MIR166e	Bra-A07: 15385796-15385945 -	Eutrema salsugineum	Esa-MIR166c	Esa-scaffold_14: 2294318-2294494 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Brara.F00211.1	0.5	NA	NA
Brara.H00179.1	0.5	NA	NA
Brara.B01017.1	1.0	NA	NA
Brara.D02105.1	1.0	NA	NA
Brara.I02808.1	1.0	NA	NA
Brara.J01422.1	1.0	NA	NA
Brara.K00217.1	1.0	NA	NA
Brara.E00955.1	1.5	NA	NA
Brara.F01856.1	1.5	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

>Identification of cold stress responsive microRNAs in two winter turnip rape (Brassica rapa L.) by high throughput sequencing. BMC Plant Biol, 2018

>Association of microRNAs with Types of Leaf Curvature in Brassica rapa. Front Plant Sci, 2018