Bra-MIR168d

Basic info.

• miRNA locus ID
• Bra-MIR168d

• miRNA locus accession
• PmiREN002444

• Organism
• Brassica rapa

• Genomic location
• Bra-A08  12072881  12073020  -

• Comments
• A member of family MIR168

• Confidence level
• 

Secondary strurture and sequence

 GG        -TT    G      C          T     A      G    -A    -T   CG    T
   TCACCGTC   GCTC GATTCG TTGGTGCAGG CGGGA CCAATT TCTG  CACA  CCA  AAGT 
   ||||||||   |||| |||||| |||||||||| ||||| |||||| ||||  ||||  |||  |||| T
   AGTGGTAG   TGAG CTAAGT AACTACGTTC GCCCT GGTTAG GGAC  GTGT  GGT  TTCA 
TAA        TCC    G      A          C     A      -    GA    TT   CG    T

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• >The elucidation of stress memory inheritance in Brassica rapa plants. Front Plant Sci, 2015
• >Identification and characterization of microRNAs in oilseed rape (Brassica napus) responsive to infection with the pathogenic fungus Verticillium longisporum using Brassica AA (Brassica rapa) and CC (Brassica oleracea) as reference genomes. New Phytol, 2014