Bra-MIR169a

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
    A      T      T    C    -A                 CGTC         GC   TA
   A GTGGAG AGAGTA AATG AGCC  AGGATGACTTGCCGGAA    GTTCATCAT  GTA  
   | |||||| |||||| |||| ||||  |||||||||||||||||    |||||||||  |||   
   T CATCTT TCTCGT TTAC TCGG  TCCTGTTGAACGGTCTT    TAAGTAGTG  TAT  
CAC -      C      T    A    CG                 TATA         GT   GG

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-559 Ath-MIR169b Ath-Chr5: 8527492-8527632 + Brassica rapa Bra-MIR169a Bra-A02: 30312893-30313021 -
SY-1007 Bra-MIR169a Bra-A02: 30312893-30313021 - Brassica rapa Bra-MIR169b Bra-A06: 22246200-22246338 +
SY-1008 Bra-MIR169a Bra-A02: 30312893-30313021 - Brassica rapa Bra-MIR169c Bra-A09: 3138861-3138989 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Brara.A03216.1 2.0 1 NA
Brara.B02046.1 2.0 NA NA
Brara.E01518.1 2.0 2 NA
Brara.F00066.1 2.0 NA NA
Brara.G03156.1 2.0 2 NA
Brara.H00096.1 2.0 2 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference