Bra-MIR169d

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  G     AT      --T    TT         AT        TATTTT     AC C   TAAA
   GAAGA  AGAGAA   GAGG  GAGCCAAGG  GACTTGCC      TACCA  G ATC    
   |||||  ||||||   ||||  |||||||||  ||||||||      |||||  | |||     
   CTTTT  TCTCTT   TTCC  CTCGGTTCC  TTGAACGG      GTGGT  C TAG    
TAG     CT      CCT    --         GG        ---CTC     -- T   TTTA

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-206 Aly-MIR169g Aly-scaffold_7: 9193033-9193153 + Brassica rapa Bra-MIR169d Bra-A01: 6326029-6326149 -
SY-568 Ath-MIR169g Ath-Chr4: 11483010-11483134 - Brassica rapa Bra-MIR169d Bra-A01: 6326029-6326149 -
SY-1010 Bra-MIR169d Bra-A01: 6326029-6326149 - Capsella rubella Cru-MIR169c Cru-scaffold_7: 7418995-7419123 +
SY-1011 Bra-MIR169d Bra-A01: 6326029-6326149 - Eutrema salsugineum Esa-MIR169c Esa-scaffold_1: 7989367-7989491 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Brara.A03708.1 1.5 1 NA
Brara.C03118.1 1.5 NA NA
Brara.J02572.1 1.5 1 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference