Bra-MIR169j

Basic info.

• miRNA locus ID
• Bra-MIR169j

• miRNA locus accession
• PmiREN002456

• Organism
• Brassica rapa

• Genomic location
• Bra-A03  17544406  17544602  -

• Comments
• A member of family MIR169

• Confidence level
• 

Secondary strurture and sequence

 ATAT     -     T      C         T            TGAAAT        ---AATA    A    -    TCTTTTCAGTTTCAAATTTGTCT
     GTGAC CAAAG AGTGTG AGCCAAGGA GACTTGCCGATT      ATATTTTT       CTTT CTAA GACA                       
     ||||| ||||| |||||| ||||||||| ||||||||||||      ||||||||       |||| |||| ||||                       T
     CGCTG GTTTC TTGTAC TCGGTTCCT TTGAACGGCTAG      TATAAAAA       TGAT CTTT TTTA                       
AGACT     T     T      A         T            ------        AGAAATT    G    A    ACATTAAAGAAGGATCGGAGAGG

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• >Microsynteny and phylogenetic analysis of tandemly organised miRNA families across five members of Brassicaceae reveals complex retention and loss history. Plant Sci, 2016