Bra-MIR169n

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  A    T   A   T  G   -     A    T    T       T    AC    TA   C     TTAT
   AGAA GAG AGT GT TGG TAGCC AGGA GACT GCCTGCG CTTA  ACCA  TCA AGACT    
   |||| ||| ||| || ||| ||||| |||| |||| ||||||| ||||  ||||  ||| |||||     
   TCTT CTC TCA CA ACT ATCGG TCCT CTGA CGGATGT GGAT  TGGT  AGT TCTGA    
TCC    T   C   -  G   T     C    -    -       C    --    TG   C     TAGC

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-211 Aly-MIR169h Aly-scaffold_1: 8198500-8198645 - Brassica rapa Bra-MIR169n Bra-A06: 7754638-7754773 -
SY-570 Ath-MIR169h Ath-Chr1: 6695442-6695584 - Brassica rapa Bra-MIR169n Bra-A06: 7754638-7754773 -
SY-1031 Bra-MIR169n Bra-A06: 7754638-7754773 - Brassica rapa Bra-MIR169o Bra-A09: 40392906-40393053 +
SY-1032 Bra-MIR169n Bra-A06: 7754638-7754773 - Brassica rapa Bra-MIR169x Bra-A08: 20152692-20152834 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Brara.A03216.1 1.0 1 NA
Brara.B02046.1 1.0 NA NA
Brara.E01518.1 1.0 1 NA
Brara.F00066.1 1.0 NA NA
Brara.G03156.1 1.0 1 NA
Brara.H00096.1 1.0 1 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference