PmiREN: Plant microRNA Encyclopedia

Bra-MIR169v

Basic info.

miRNA locus ID
Bra-MIR169v

miRNA locus accession
PmiREN002468

Organism
Brassica rapa

Genomic location
Bra-A08 1019220 1019350 -

Comments
A member of family MIR169

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  G     AT   AT    T  T         AT         ATT        AA   TAAA   GAT
   GAAAA  AGA  ATGA AT GAGCCAAAG  GACTTGCCG   TTACCGAT  TTC    ACT   
   |||||  |||  |||| || |||||||||  |||||||||   ||||||||  |||    |||    
   CTTTT  TCT  TACT TG CTCGGTTTC  TTGAACGGC   GATGGTTA  AAG    TGG   
TAG     CT   CT    T  T         AG         --C        --   -TCA   TTA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID: 3274
Chromosome: Bra-A08
Cluster start: 1016926
Cluster end: 1019639

miRNA locus ID	miRNA locus accession	Chromosome	Strand	Start	End
Bra-MIR169u , Bra-MIR169v , Bra-MIR169w	PmiREN002467, PmiREN002468, PmiREN002469	Bra-A08	-	1016926	1019639

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Brara.A03708.1	1.0	1	NA
Brara.C03118.1	1.0	NA	NA
Brara.J02572.1	1.0	1	NA

Mature miRNA conservation

Link

No link
No link

Reference

>Microsynteny and phylogenetic analysis of tandemly organised miRNA families across five members of Brassicaceae reveals complex retention and loss history. Plant Sci, 2016