Bra-MIR172b

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  ATC       TTC   A         C           A    GAA  TGAAAA        ATTAT
     AGTCGTT   TGT GGTGCAGCA CATTAAGATTC CATG   AT      AACCCTAA     
     |||||||   ||| ||||||||| ||||||||||| ||||   ||      ||||||||      
     TCGGCAA   ACA CTACGTCGT GTAGTTCTAAG GTAT   TA      TTGGGATT     
AACCA       CCA   A         A           A    ATG  -TAGTC        AATTA

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-239 Aly-MIR172b Aly-scaffold_6: 1397243-1397369 - Brassica rapa Bra-MIR172b Bra-A10: 19091563-19091697 +
SY-598 Ath-MIR172b Ath-Chr5: 1188191-1188317 - Brassica rapa Bra-MIR172b Bra-A10: 19091563-19091697 +
SY-837 Bol-MIR172a Bol-C02: 1546875-1547006 - Brassica rapa Bra-MIR172b Bra-A10: 19091563-19091697 +
SY-842 Bol-MIR172b Bol-C09: 39300315-39300447 + Brassica rapa Bra-MIR172b Bra-A10: 19091563-19091697 +
SY-848 Bol-MIR172c Bol-C03: 514956-515091 - Brassica rapa Bra-MIR172b Bra-A10: 19091563-19091697 +
SY-1057 Bra-MIR172a Bra-A02: 681031-681163 - Brassica rapa Bra-MIR172b Bra-A10: 19091563-19091697 +
SY-1061 Bra-MIR172b Bra-A10: 19091563-19091697 + Capsella rubella Cru-MIR172d Cru-scaffold_6: 1174066-1174194 -
SY-1062 Bra-MIR172b Bra-A10: 19091563-19091697 + Eutrema salsugineum Esa-MIR172a Esa-scaffold_2: 1159895-1160021 -
SY-1067 Bra-MIR172e Bra-A03: 690626-690761 - Brassica rapa Bra-MIR172b Bra-A10: 19091563-19091697 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Brara.A00160.1 0.5 0 NA
Brara.B01045.1 0.5 NA NA
Brara.C02403.1 0.5 0 NA
Brara.G01386.1 0.5 NA NA
Brara.J01371.1 0.5 0 NA
Brara.K01270.1 0.5 0 NA
Brara.B01095.1 1.0 0 NA
Brara.G01191.1 1.0 0 NA
Brara.E00605.1 1.5 NA NA
Brara.I03764.1 1.5 NA NA
Brara.F01960.1 2.0 2 NA
Brara.G01342.1 2.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference