Bra-MIR172d

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
 AAC     -        A                     A      A  T  TTTTC
    AGCCG GTAGTTGC GATGCAGCATCATTAAGATTC CAAGAG TG GG     
    ||||| |||||||| ||||||||||||||||||||| |||||| || ||     T
    TCGGT CATCAACG CTACGTCGTAGTAGTTCTAAG GTTCTC GC CT     
CACA     A        A                     G      C  T  TTTGT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-250 Aly-MIR172e Aly-scaffold_8: 19150529-19150670 + Brassica rapa Bra-MIR172d Bra-A03: 5107913-5108027 -
SY-606 Ath-MIR172e Ath-Chr5: 23988464-23988606 + Brassica rapa Bra-MIR172d Bra-A03: 5107913-5108027 -
SY-1064 Bra-MIR172d Bra-A03: 5107913-5108027 - Brassica rapa Bra-MIR172j Bra-A10: 11990338-11990457 +
SY-1065 Bra-MIR172d Bra-A03: 5107913-5108027 - Capsella rubella Cru-MIR172e Cru-scaffold_8: 10226143-10226285 +
SY-1066 Bra-MIR172d Bra-A03: 5107913-5108027 - Eutrema salsugineum Esa-MIR172b Esa-scaffold_2: 8433222-8433365 +
SY-1072 Bra-MIR172h Bra-A02: 5458096-5458238 - Brassica rapa Bra-MIR172d Bra-A03: 5107913-5108027 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Brara.I03764.1 0.5 NA NA
Brara.A00160.1 1.0 0 NA
Brara.B01045.1 1.0 NA NA
Brara.B01095.1 1.0 0 NA
Brara.C02403.1 1.0 0 NA
Brara.G01386.1 1.0 NA NA
Brara.J01371.1 1.0 0 NA
Brara.K01270.1 1.0 0 NA
Brara.G01191.1 1.5 1 NA
Brara.E00605.1 2.0 NA NA
Brara.G01342.1 2.0 NA NA
Brara.H01614.1 2.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

Link

Reference