Bra-MIR172f

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
 GGC        -T     A     T    T         AG      TATTCTTT      T  TCC
    AGTCATTT  TTGCT TTGCA CATC TCAAGATTC  AAATCA        GATGGG TC   
    ||||||||  ||||| ||||| |||| |||||||||  ||||||        |||||| ||    
    TCGGTAAA  AACGG GACGT GTAG AGTTCTAAG  TTTGGT        CTACCC AG   
TTTT        TT     C     C    T         AG      ---TTCTT      T  TCT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-247 Aly-MIR172d Aly-scaffold_5: 17548823-17548951 + Brassica rapa Bra-MIR172f Bra-A04: 2808596-2808726 -
SY-604 Ath-MIR172d Ath-Chr3: 20587901-20588031 + Brassica rapa Bra-MIR172f Bra-A04: 2808596-2808726 -
SY-1070 Bra-MIR172f Bra-A04: 2808596-2808726 - Brassica rapa Bra-MIR172c Bra-A09: 34969393-34969523 +
SY-1071 Bra-MIR172f Bra-A04: 2808596-2808726 - Capsella rubella Cru-MIR172c Cru-scaffold_5: 10805832-10805970 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Brara.A00160.1 0.5 0 NA
Brara.B01045.1 0.5 NA NA
Brara.C02403.1 0.5 0 NA
Brara.G01386.1 0.5 NA NA
Brara.J01371.1 0.5 0 NA
Brara.K01270.1 0.5 0 NA
Brara.B01095.1 1.0 0 NA
Brara.G01191.1 1.0 1 NA
Brara.E00605.1 1.5 NA NA
Brara.I03764.1 1.5 NA NA
Brara.F01960.1 2.0 2 NA
Brara.G01342.1 2.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference