Bra-MIR172i

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  CAC        T      C                   A   -   TTGATGGACGGTGGTGGTTCA
     GGTCGTTG TTGCTG TGTGGCATCATCAAGATTC CAT CCG                     
     |||||||| |||||| ||||||||||||||||||| ||| |||                      
     TCGGCAAC AATGGC ACGTCGTAGTAGTTCTAAG GTA AAG                     
TCCTA        T      T                   G   A   TGTTCTCTTGAAACCCATCTC

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-233 Aly-MIR172a Aly-scaffold_4: 12144112-12144245 + Brassica rapa Bra-MIR172i Bra-A03: 12117350-12117484 +
SY-1076 Bra-MIR172i Bra-A03: 12117350-12117484 + Capsella rubella Cru-MIR172b Cru-scaffold_4: 6361908-6362037 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Brara.I03764.1 0.5 NA NA
Brara.A00160.1 1.0 0 NA
Brara.B01045.1 1.0 NA NA
Brara.B01095.1 1.0 0 NA
Brara.C02403.1 1.0 0 NA
Brara.G01386.1 1.0 NA NA
Brara.J01371.1 1.0 0 NA
Brara.K01270.1 1.0 0 NA
Brara.G01191.1 1.5 1 NA
Brara.E00605.1 2.0 NA NA
Brara.G01342.1 2.0 NA NA
Brara.H01614.1 2.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

Link

Reference