Bra-MIR2111e

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
G      --         CT         C         T        ACATAG      GC
 GTACTT  GGTGAGGAA  GGTAATCTG ATCCTGAGG TTAAAAAT      GCACAT  
 ||||||  |||||||||  ||||||||| ||||||||| ||||||||      ||||||   
 CATGAA  TCATTCCTT  CCATTAGAC TAGGGCTCC AATTTTTG      TGTGTA  
A      AC         CT         A         T        ATATTA      AA

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-261 Aly-MIR2111b Aly-scaffold_6: 474781-474903 + Brassica rapa Bra-MIR2111e Bra-A03: 228483-228604 +
SY-1080 Bra-MIR2111b Bra-A02: 260940-261068 + Brassica rapa Bra-MIR2111e Bra-A03: 228483-228604 +
SY-1082 Bra-MIR2111e Bra-A03: 228483-228604 + Brassica rapa Bra-MIR2111d Bra-A10: 19725542-19725666 -
SY-1083 Bra-MIR2111e Bra-A03: 228483-228604 + Capsella rubella Cru-MIR2111 Cru-scaffold_6: 342293-342417 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Brara.F03228.1 0.5 0 NA
Brara.B03273.1 1.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference