PmiREN: Plant microRNA Encyclopedia

Bra-MIR2111a

Basic info.

miRNA locus ID
Bra-MIR2111a

miRNA locus accession
PmiREN002492

Organism
Brassica rapa

Genomic location
Bra-A03 16592419 16592561 -

Comments
A member of family MIR2111

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

AA    ---         CC                    -TTT      -TGATTAT       ---AC    CG
  GTAT   TGGTGAGGA  GGGTAATCTGCATCCTGAGG    AAAGCT        ACGCATA     ATGC  
  ||||   |||||||||  ||||||||||||||||||||    ||||||        |||||||     ||||   
  CATG   ATCATTCCT  TCCATTAGGCGTAGGGCTCC    TTTCGA        TGTGTAT     TACG  
 A    CAT         TC                    TGAT      TAAGATTT       CAATA    CA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID	miRNA locus 1	miRNA locus 1 position	Organism	miRNA locus 2	miRNA locus 2 position
SY-259	Aly-MIR2111a	Aly-scaffold_3: 3692006-3692149 +	Brassica rapa	Bra-MIR2111a	Bra-A03: 16592419-16592561 -
SY-612	Ath-MIR2111a	Ath-Chr3: 2854291-2854434 +	Brassica rapa	Bra-MIR2111a	Bra-A03: 16592419-16592561 -
SY-1084	Bra-MIR2111f	Bra-A01: 28822330-28822466 -	Brassica rapa	Bra-MIR2111a	Bra-A03: 16592419-16592561 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Brara.F03228.1	0.5	0	NA
Brara.B03273.1	1.0	NA	NA

Mature miRNA conservation

Link

Reference

No reference

Bra-MIR2111a

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