Bra-MIR319h

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
    A     G     TAT  C     A              T          ACA     GT          G   AC        CCAAA    C    AAAAACAA
  TT AAATA GTAGA   AG AGGAG TTCTTTCAGTCCAA CGTGGATAGA   AGAGG  AGAAATATCT CCG  TCATTCAT     CACT TGGT        
  || ||||| |||||   || ||||| |||||||||||||| ||||||||||   |||||  |||||||||| |||  ||||||||     |||| ||||        G
  GA TTTGT CATCT   TC TCCTC AGGGAAGTCAGGTT GTGTCTATTT   TCTCT  TTTTTGTAGA GGC  AGTAAGTG     GTGA ACCA        
TT  C     G     CTT  T     G              T          --C     GC          G   GT        TATCA    C    AATCTAGA

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-386 Aly-MIRN123b Aly-scaffold_4: 19899206-19899332 + Brassica rapa Bra-MIR319h Bra-A05: 1061830-1062044 +
SY-627 Ath-MIR319c Ath-Chr2: 17029693-17029909 + Brassica rapa Bra-MIR319h Bra-A05: 1061830-1062044 +
SY-1096 Bra-MIR319f Bra-A03: 10438625-10438847 + Brassica rapa Bra-MIR319h Bra-A05: 1061830-1062044 +
SY-1099 Bra-MIR319g Bra-A04: 19600737-19600957 + Brassica rapa Bra-MIR319h Bra-A05: 1061830-1062044 +
SY-1102 Bra-MIR319h Bra-A05: 1061830-1062044 + Capsella rubella Cru-MIR319a Cru-scaffold_4: 12176944-12177161 +
SY-1103 Bra-MIR319h Bra-A05: 1061830-1062044 + Eutrema salsugineum Esa-MIR319a Esa-scaffold_10: 10950425-10950647 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Brara.A03407.1 1.5 NA NA
Brara.C01651.1 1.5 NA NA
Brara.C02447.1 1.5 NA NA
Brara.E02934.1 1.5 NA NA
Brara.G01291.1 1.5 NA NA
Brara.B00489.1 2.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

Link

Reference