PmiREN: Plant microRNA Encyclopedia

Bra-MIR390d

Basic info.

miRNA locus ID
Bra-MIR390d

miRNA locus accession
PmiREN002505

Organism
Brassica rapa

Genomic location
Bra-A03 5294939 5295062 -

Comments
A member of family MIR390

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

   GT   T      T       A         G           TGTCTCACCA    TATGAA
     AGT GAGAAG AGCTGTA AGCTCAGGA GGATAGCGCCA          GTAC      
     ||| |||||| ||||||| ||||||||| |||||||||||          ||||       
     TCG TTCTTC TCGGTAT TTGAGTCCT CCTATCGCGGT          TATG      
TATTT   -      T       C         A           --TATATCTA    TTTGTA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID	miRNA locus 1	miRNA locus 1 position	Organism	miRNA locus 2	miRNA locus 2 position
SY-1111	Bra-MIR390d	Bra-A03: 5294939-5295062 -	Brassica rapa	Bra-MIR390f	Bra-A10: 11457531-11457654 +
SY-1112	Bra-MIR390d	Bra-A03: 5294939-5295062 -	Capsella rubella	Cru-MIR390b	Cru-scaffold_8: 9836443-9836569 +
SY-1113	Bra-MIR390d	Bra-A03: 5294939-5295062 -	Eutrema salsugineum	Esa-MIR390b	Esa-scaffold_2: 8867472-8867579 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

No target gene.

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Bra-MIR390d

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