PmiREN: Plant microRNA Encyclopedia

Bra-MIR391a

Basic info.

miRNA locus ID
Bra-MIR391a

miRNA locus accession
PmiREN002508

Organism
Brassica rapa

Genomic location
Bra-A10 12427630 12427742 +

Comments
A member of family MIR391

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

 AAC    A   -    TTC   T  C          G  C     CT      TAAG
    TGCA ATA AAGG   GCT CG AGGAGAGATA CG CATCA  TCTTCT    
    |||| ||| ||||   ||| || |||||||||| || |||||  ||||||    A
    ACGT TAT TTCC   CGA GC TCCTCTCTAT GC GTGGT  AGAAGA    
ATCT    A   A    TAA   T  A          G  A     --      TTTG

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID	miRNA locus 1	miRNA locus 1 position	Organism	miRNA locus 2	miRNA locus 2 position
SY-287	Aly-MIR391	Aly-scaffold_8: 19524565-19524676 +	Brassica rapa	Bra-MIR391a	Bra-A10: 12427630-12427742 +
SY-638	Ath-MIR391	Ath-Chr5: 24293140-24293251 +	Brassica rapa	Bra-MIR391a	Bra-A10: 12427630-12427742 +
SY-1120	Bra-MIR391a	Bra-A10: 12427630-12427742 +	Capsella rubella	Cru-MIR391	Cru-scaffold_8: 10546398-10546502 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Brara.J01134.1	1.5	NA	NA

Mature miRNA conservation

Link

Reference

No reference

Bra-MIR391a

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