Bra-MIR393b

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  CAT   A   A     A    C         C    T     -T      GGTGAATTTTC     T     C     TAG GGCA
     AGC ACT GAGGA GGAT CAAAGGGAT GCAT GATCC  AATTAA           CCGAT ATTTT TTGGT   T    
     ||| ||| ||||| |||| ||||||||| |||| |||||  ||||||           ||||| ||||| |||||   |     
     TCG TGG TTCCT CTTA GTTTCCCTA CGTA CTAGG  TTAATT           GGTTA TAAAA AACCA   A    
TCCCT   A   C     A    A         T    -     TT      -----------     T     C     TAA GAAA

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-292 Aly-MIR393a Aly-scaffold_4: 19396116-19396270 + Brassica rapa Bra-MIR393b Bra-A05: 3291935-3292095 -
SY-298 Aly-MIR393b Aly-scaffold_5: 17660783-17660959 + Brassica rapa Bra-MIR393b Bra-A05: 3291935-3292095 -
SY-643 Ath-MIR393a Ath-Chr2: 16652091-16652245 + Brassica rapa Bra-MIR393b Bra-A05: 3291935-3292095 -
SY-1121 Bra-MIR393a Bra-A04: 19205419-19205573 + Brassica rapa Bra-MIR393b Bra-A05: 3291935-3292095 -
SY-1127 Bra-MIR393b Bra-A05: 3291935-3292095 - Capsella rubella Cru-MIR393a Cru-scaffold_4: 11771167-11771330 +
SY-1128 Bra-MIR393b Bra-A05: 3291935-3292095 - Eutrema salsugineum Esa-MIR393a Esa-scaffold_10: 10483751-10483910 +
SY-1129 Bra-MIR393b Bra-A05: 3291935-3292095 - Eutrema salsugineum Esa-MIR393b Esa-scaffold_16: 74485-74658 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Brara.D00378.1 0.0 0 NA
Brara.B03253.1 1.0 NA NA
Brara.H02636.1 1.0 NA NA
Brara.I05093.1 1.0 NA NA
Brara.D00040.1 1.5 NA NA
Brara.G01991.1 1.5 NA NA
Brara.I04357.1 1.5 NA NA
Brara.I00210.1 2.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference