Bra-MIR394a

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
     T    T      A   -      TTC           T  ------      -  GTA
 AGAG TTCT ATAGAT TCT TTGGCA   TGTCCACCTCC CT      ACATAT GT   
 |||| |||| |||||| ||| ||||||   ||||||||||| ||      |||||| ||    
 TCTT GGGA TGTCTA AGA AACCGT   ACGGGTGGAGG GA      TGTGTA CA   
T    C    T      G   T      CAT           T  GTGTCT      G  GGT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-657 Ath-MIR394b Ath-Chr1: 28568801-28568936 + Brassica rapa Bra-MIR394a Bra-A02: 14456109-14456225 +
SY-1140 Bra-MIR394a Bra-A02: 14456109-14456225 + Brassica rapa Bra-MIR394e Bra-A07: 25776276-25776410 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Brara.G00856.1 1.0 1 NA
Brara.I03023.1 1.0 1 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference