Bra-MIR394b

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
     T    T      T   -      TTC  T           --G      -   GTAAGT
 AGAG TTCT ACAGAT TCT TTGGCA   TG CCACCTCCTTT   TATATA AAT      
 |||| |||| |||||| ||| ||||||   || |||||||||||   |||||| |||       
 TCTT GGGA TGTCTA AGA GACCGT   AC GGTGGAGGAAG   GTGTGT TTG      
T    T    T      C   T      CAT  T           AAA      G   GCTATA

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-1141 Bra-MIR394b Bra-A06: 8428675-8428797 + Eutrema salsugineum Esa-MIR394a Esa-scaffold_5: 8491404-8491546 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Brara.G00856.1 1.0 1 NA
Brara.I03023.1 1.0 1 NA

Mature miRNA conservation

?

Mature miRNA conservation

Link

Reference