Bra-MIR394c

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
     T    T     GA   -      TTC              -------  - T     T   TG
 AGAG TTCT ACAGA  TCT TTGGCA   TGTCCACCTCCCCT       AC C ATGTA ATG  
 |||| |||| |||||  ||| ||||||   ||||||||||||||       || | ||||| |||  T
 TCTT GGGA TGTCT  AGA AACCGT   ACGGGTGGAGGGGG       TG G TGCAT TAT  
T    T    T     AG   C      CAT              AGTGTTT  T T     C   TA

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-307 Aly-MIR394b Aly-scaffold_2: 17011862-17011982 + Brassica rapa Bra-MIR394c Bra-A07: 19165563-19165689 -
SY-658 Ath-MIR394b Ath-Chr1: 28568801-28568936 + Brassica rapa Bra-MIR394c Bra-A07: 19165563-19165689 -
SY-1142 Bra-MIR394c Bra-A07: 19165563-19165689 - Eutrema salsugineum Esa-MIR394b Esa-scaffold_9: 1977466-1977599 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Brara.G00856.1 1.0 1 NA
Brara.I03023.1 1.0 1 NA

Mature miRNA conservation

?

Mature miRNA conservation

Link

Reference