Bra-MIR396b

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  ACA     CTC        C            C           --CCT  -TT     TA  TCTATTCTCAC    -  ATATATATATATTA
     TGACT   TCTGTATT TTCCACAGCTTT TTGAACTGCAA     TC   CAGAT  GC           ATAT AT              
     |||||   |||||||| |||||||||||| |||||||||||     ||   |||||  ||           |||| ||               
     ACTGA   AGACATAG AGGGTGTCGAAA AACTTGGCGTT     AG   GTCTA  CG           TAAT GT              
AGAAA     AAC        A            T           TAGTC  CTT     --  ----TTAAATT    T  ATTGATACGATACC

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-1161 Bra-MIR396b Bra-A09: 5182058-5182239 + Capsella rubella Cru-MIR396a Cru-scaffold_3: 10624783-10624945 -
SY-1162 Bra-MIR396b Bra-A09: 5182058-5182239 + Eutrema salsugineum Esa-MIR396a Esa-scaffold_11: 11322331-11322501 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Brara.C03329.1 2.0 NA NA
Brara.G02611.1 2.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference