Bra-MIR399f

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  AAA    AAAAT C     A     A       A          AC   T  -TT   CTT     CTC
     GGTG     G ATTAC GGGCA GATCTCT TTGGCAGGAA  CAT AC   GAA   TGCAT   
     ||||     | ||||| ||||| ||||||| ||||||||||  ||| ||   |||   |||||    
     CCGC     C TAATG CCCGT TTAGAGG AACCGTCTTT  GTG TG   CTT   ACGTA   
TACAA    GTCTT T     G     -       A          GA   C  TTT   --T     TTT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-357 Aly-MIR399d Aly-scaffold_1: 12884715-12884820 + Brassica rapa Bra-MIR399f Bra-A07: 9697003-9697138 -
SY-690 Ath-MIR399a Ath-Chr1: 10227065-10227205 + Brassica rapa Bra-MIR399f Bra-A07: 9697003-9697138 -
SY-701 Ath-MIR399f Ath-Chr2: 14444989-14445124 + Brassica rapa Bra-MIR399f Bra-A07: 9697003-9697138 -
SY-1180 Bra-MIR399f Bra-A07: 9697003-9697138 - Brassica rapa Bra-MIR399g Bra-A08: 18094144-18094280 -
SY-1181 Bra-MIR399f Bra-A07: 9697003-9697138 - Capsella rubella Cru-MIR399b Cru-scaffold_1: 9989761-9989903 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Brara.D01377.1 2.0 NA NA
Brara.D02054.1 2.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

Link

Reference