Bra-MIR400

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
     AG    T        T         G              G A     TAATC    G
   GA  TTGC GAAGATTG TTTATGAGA TATTATAAGTCACT C TTTGG     AAGT 
   ||  |||| |||||||| ||||||||| |||||||||||||| | |||||     |||| T
   CT  AACG TTTTTAGC AAGTACTCT GTAATATTCAGTGA G AAACC     TTCG 
ATT  GA    -        T         A              A C     ---CT    T

miRNA cluster info.

miRNA locus ID miRNA locus accession Chromosome Strand Start End
Bra-MIR400 ,   Bra-MIR5654b PmiREN002544, PmiREN002548 Bra-A09 + 24885198 24885540

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-1184 Bra-MIR400 Bra-A09: 24885198-24885317 + Eutrema salsugineum Esa-MIRN1023 Esa-scaffold_5: 2382364-2382473 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Brara.I01253.1 1.0 1 NA
Brara.I01310.1 1.0 1 NA
Brara.A03046.1 1.5 NA NA
Brara.I01191.1 1.5 1 NA
Brara.K00599.1 1.5 1 NA
Brara.C04398.1 2.0 NA NA
Brara.D01843.1 2.0 NA NA
Brara.E01773.1 2.0 1 NA

Mature miRNA conservation

?

Mature miRNA conservation

Link

Reference