Bra-MIR408

Basic info.

• miRNA locus ID
• Bra-MIR408

• miRNA locus accession
• PmiREN002546

• Organism
• Brassica rapa

• Genomic location
• Bra-A05  469138  469268  -

• Comments
• A member of family MIR408

• Confidence level
• 

Secondary strurture and sequence

  AAAGTGGTAATCA   A   A       CAA    A      ATT   TTTTT      A   CAAA
               GAG GAG CAGGGAA   GCAG GCATGG   GAG     ACCAAA CAT    
               ||| ||| |||||||   |||| ||||||   |||     |||||| |||    T
               CTC CTC GTCCCTT   CGTC CGTACC   CTC     TGGTTT GTA    
TTCCCTATCTTTCTC   C   G       CTC    A      CTT   -----      -   TCAG

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• Link To miRbase
• Link To PNDB

Reference

• No reference