PmiREN: Plant microRNA Encyclopedia

Bra-MIR9560a

Basic info.

miRNA locus ID
Bra-MIR9560a

miRNA locus accession
PmiREN002579

Organism
Brassica rapa

Genomic location
Bra-A09 2541488 2541602 +

Comments
A member of family MIR9560

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

 TGA       -   T  A        T        A           -GTATA  AGT
    AGATTAA GTG GT TTGACAGG GGTGGAAC AATATGAGTTT      GT   
    ||||||| ||| || |||||||| |||||||| |||||||||||      ||    
    TCTAATT CAC CG AGTTGTCC CCATCTTG TTATACTCAAA      CA   
TAAG       A   C  A        T        A           GTAAAA  AGC

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID	miRNA locus 1	miRNA locus 1 position	Organism	miRNA locus 2	miRNA locus 2 position
SY-1192	Bra-MIR9560b	Bra-A06: 23124250-23124366 +	Brassica rapa	Bra-MIR9560a	Bra-A09: 2541488-2541602 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Brara.F02531.1	2.0	NA	NA

Mature miRNA conservation

Link

Reference

No reference

Bra-MIR9560a

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