PmiREN: Plant microRNA Encyclopedia

Bra-MIR9560b

Basic info.

miRNA locus ID
Bra-MIR9560b

miRNA locus accession
PmiREN002580

Organism
Brassica rapa

Genomic location
Bra-A06 23124250 23124366 +

Comments
A member of family MIR9560

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

 TTA  C    -   T  A   A    T        A           --------    ACA
    AG TTAA GTG GT TTG CAGG GGTGGAAC AATATGAGTTT        TTGA   
    || |||| ||| || ||| |||| |||||||| |||||||||||        ||||   T
    TC AATT CAC CG AGT GTCC CCATCTTG TTATACTCAAA        AACT   
TAAG  T    A   C  A   C    T        A           TTAAAACA    GAT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID	miRNA locus 1	miRNA locus 1 position	Organism	miRNA locus 2	miRNA locus 2 position
SY-1192	Bra-MIR9560b	Bra-A06: 23124250-23124366 +	Brassica rapa	Bra-MIR9560a	Bra-A09: 2541488-2541602 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Brara.F02531.1	2.0	NA	NA

Mature miRNA conservation

Link

Reference

No reference

Bra-MIR9560b

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